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 +
[[https://leandeep.com/install-jupyter-lab-on-ubuntu-18.04/]]
 
O Jupyter Hub da Plataforma de Ciência de Dados aplicada à Saúde (PCDaS), disponível para usiários de projetos parceiros, roda kernels em Python e R conectados ao dados já indexados em Elaticserach.
 
O Jupyter Hub da Plataforma de Ciência de Dados aplicada à Saúde (PCDaS), disponível para usiários de projetos parceiros, roda kernels em Python e R conectados ao dados já indexados em Elaticserach.
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 +
= Jupyter HUB =
 +
curl https://raw.githubusercontent.com/jupyterhub/the-littlest-jupyterhub/master/bootstrap/bootstrap.py | sudo -E python3 - --admin \<admin-user-name>
  
 
= Checar Versão =
 
= Checar Versão =
Linha 7: Linha 11:
 
[https://github.com/jupyterhub/jupyterhub GutHub JupyerHub]
 
[https://github.com/jupyterhub/jupyterhub GutHub JupyerHub]
  
 +
== Pré-requesito ==
 +
apt install npm
 +
apt install python3-pip
 +
 +
== Instalando Jupyter ==
 
Using pip
 
Using pip
 
JupyterHub can be installed with pip, and the proxy with npm:
 
JupyterHub can be installed with pip, and the proxy with npm:
Linha 12: Linha 21:
 
  npm install -g configurable-http-proxy
 
  npm install -g configurable-http-proxy
 
  python3 -m pip install jupyterhub     
 
  python3 -m pip install jupyterhub     
 +
 
If you plan to run notebook servers locally, you will need to install the Jupyter notebook package:
 
If you plan to run notebook servers locally, you will need to install the Jupyter notebook package:
  
 
  python3 -m pip install --upgrade notebook
 
  python3 -m pip install --upgrade notebook
 +
 +
== Instalando Jupyter no Windows ==
 +
pip3 install jupyterlab
 +
 +
== Iniciando o JupyterHub ==
 +
jupyterhub
 +
 +
== Executando no Windows ==
 +
jupyter-lab
 +
 +
== Arquivo de configuração ==
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c.JupyterHub.data_files_path = '/usr/local/share/jupyterhub'
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 +
  
 
Start the Hub
 
Start the Hub
Linha 20: Linha 44:
  
 
  jupyterhub --ip 10.0.1.2 --port 443 --ssl-key my_ssl.key --ssl-cert my_ssl.cert
 
  jupyterhub --ip 10.0.1.2 --port 443 --ssl-key my_ssl.key --ssl-cert my_ssl.cert
 +
 +
== Kernal ==
 +
Identificar os Kernels instalados
 +
jupyter kernelspec list
 +
 +
== Configurações no Ubuntu ==
 +
Gerar arquivo de configurações
 +
jupyter-lab --generate-config
 +
pico /root/.jupyter/jupyter_notebook_config.py
 +
 +
== Criando um serviço ==
 +
Crie um arquivo jupyter.service
 +
pico /etc/systemd/system/jupyter.service
 +
Lembre-se de alterar WorkingDirectory
 +
Com o conteúdo,
 +
[Unit]
 +
Description=Jupyter Hub
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[Service]
 +
Type=simple
 +
PIDFile=/run/jupyter.pid
 +
ExecStart=/opt/tljh/hub/bin/jupyterhub --config=/root/.jupyter/jupyter_notebook_config.py
 +
WorkingDirectory=/data/jupyter
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User=root
 +
Group=root
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Restart=always
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RestartSec=10
 +
#KillMode=mixed
 +
[Install]
 +
WantedBy=multi-user.target
  
 
== R with JupyterHub ==
 
== R with JupyterHub ==
Linha 35: Linha 88:
 
== Composer ==
 
== Composer ==
 
  apt-get install composer
 
  apt-get install composer
 +
 +
== Jupyter com o R ==
 +
R
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install.packages('IRkernel')
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IRkernel::installspec(user = FALSE)
 +
 +
Source: [[https://developers.refinitiv.com/en/article-catalog/article/setup-jupyter-notebook-r]]
  
 
== Jupyter with PHP ==
 
== Jupyter with PHP ==
 
Necessário instalar o Composer e o php-zmg
 
Necessário instalar o Composer e o php-zmg
 +
apt-get install composer
  
 +
Ativamdno modulo ZMQ
 
  apt-get install php-zmq  
 
  apt-get install php-zmq  
−
  https://litipk.github.io/Jupyter-PHP-Installer/
+
 
−
  https://litipk.github.io/Jupyter-PHP-Installer/dist/jupyter-php-installer.phar
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  wget https://litipk.github.io/Jupyter-PHP-Installer/dist/jupyter-php-installer.phar
 +
php ./jupyter-php-installer.phar install.
 +
 +
 
 +
  [[https://litipk.github.io/Jupyter-PHP-Installer/ Jupyter-PHP's Installer]]
 +
 
 +
== Jupyter with Python ==
 +
 
 +
pip install pyDataverse
  
 
== Outros pacotes ==
 
== Outros pacotes ==
 
GitHub jupyter/nbgraber
 
GitHub jupyter/nbgraber
 +
 +
 +
==Jupyter FABICO--
 +
[[http://143.54.210.171/ http://143.54.210.171/]]
 +
user: adminjupyter
 +
senha: jpthb
 +
 +
=Kernel=
 +
Lista os Kernels
 +
jupyter kernelspec list
 +
 +
=Apache2=
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<IfModule mod_ssl.c>
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<VirtualHost *:443>
 +
    ServerAdmin renefgj@gmail.com
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    ErrorLog ${APACHE_LOG_DIR}.error.log
 +
    CustomLog ${APACHE_LOG_DIR}/access.log combined
 +
 
 +
    SSLProxyEngine On
 +
    SSLProxyVerify none
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    SSLProxyCheckPeerCN off
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    SSLProxyCheckPeerName off
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    SSLProxyCheckPeerExpire off
 +
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    ProxyPreserveHost On
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    ProxyRequests Off
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    LogLevel debug
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    ProxyPass / http://143.54.112.219:100/
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    ProxyPassReverse / http://143.54.112.219:100/
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 +
    Header edit Origin jupyther.brapci.inf.br 143.54.112.219:100
 +
    RequestHeader edit Origin jupyther.brapci.inf.br 143.54.112.219:100
 +
    Header edit Referer jupyther.brapci.inf.br 143.54.112.219:100
 +
    RequestHeader edit Referer jupyther.brapci.inf.br 143.54.112.219:100
 +
 +
    <Location ~ "/(user/[^/]*)/(api/kernels/[^/]+/channels|terminals/websocket)/?">
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        ProxyPass ws://143.54.112.219:100
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        ProxyPassReverse ws://143.54.112.219:100
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    </Location>
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 +
    ServerName jupyter.brapci.inf.br
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    Include /etc/letsencrypt/options-ssl-apache.conf
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    SSLCertificateFile /etc/letsencrypt/live/brapci.inf.br-0001/fullchain.pem
 +
    SSLCertificateKeyFile /etc/letsencrypt/live/brapci.inf.br-0001/privkey.pem
 +
</VirtualHost>
 +
</IfModule>

Edição atual tal como às 16h40min de 17 de fevereiro de 2024

[[1]] O Jupyter Hub da Plataforma de Ciência de Dados aplicada à Saúde (PCDaS), disponível para usiários de projetos parceiros, roda kernels em Python e R conectados ao dados já indexados em Elaticserach.

Jupyter HUB

curl https://raw.githubusercontent.com/jupyterhub/the-littlest-jupyterhub/master/bootstrap/bootstrap.py | sudo -E python3 - --admin \<admin-user-name>

Checar Versão

jupyter --version

Instalação Jupyter Hub

GutHub JupyerHub

Pré-requesito

apt install npm
apt install python3-pip

Instalando Jupyter

Using pip JupyterHub can be installed with pip, and the proxy with npm: 

npm install -g configurable-http-proxy
python3 -m pip install jupyterhub

If you plan to run notebook servers locally, you will need to install the Jupyter notebook package: 

python3 -m pip install --upgrade notebook

Instalando Jupyter no Windows

pip3 install jupyterlab

Iniciando o JupyterHub

jupyterhub

Executando no Windows

jupyter-lab

Arquivo de configuração

c.JupyterHub.data_files_path = '/usr/local/share/jupyterhub'


Start the Hub To start the Hub on a specific url and port 10.0.1.2:443 with https: 

jupyterhub --ip 10.0.1.2 --port 443 --ssl-key my_ssl.key --ssl-cert my_ssl.cert

Kernal

Identificar os Kernels instalados 

jupyter kernelspec list

Configurações no Ubuntu

Gerar arquivo de configurações 

jupyter-lab --generate-config
pico /root/.jupyter/jupyter_notebook_config.py

Criando um serviço

Crie um arquivo jupyter.service 

pico /etc/systemd/system/jupyter.service
Lembre-se de alterar WorkingDirectory

Com o conteúdo, 

[Unit]
Description=Jupyter Hub
[Service]
Type=simple
PIDFile=/run/jupyter.pid
ExecStart=/opt/tljh/hub/bin/jupyterhub --config=/root/.jupyter/jupyter_notebook_config.py
WorkingDirectory=/data/jupyter
User=root
Group=root
Restart=always
RestartSec=10
#KillMode=mixed
[Install]
WantedBy=multi-user.target

R with JupyterHub

https://jupyter.org/try


GitHub R Acesse o R 

R

Instale os pacote 

install.packages('IRkernel')
IRkernel::installspec()  # to register the kernel in the current R installation

Composer

apt-get install composer

Jupyter com o R

R
install.packages('IRkernel')
IRkernel::installspec(user = FALSE)

Source: [[2]]

Jupyter with PHP

Necessário instalar o Composer e o php-zmg 

apt-get install composer

Ativamdno modulo ZMQ 

apt-get install php-zmq 

wget https://litipk.github.io/Jupyter-PHP-Installer/dist/jupyter-php-installer.phar
php ./jupyter-php-installer.phar install.


[Jupyter-PHP's Installer]

Jupyter with Python

pip install pyDataverse

Outros pacotes

GitHub jupyter/nbgraber


==Jupyter FABICO-- 

[http://143.54.210.171/]
user: adminjupyter
senha: jpthb

Kernel

Lista os Kernels 

jupyter kernelspec list

Apache2

<IfModule mod_ssl.c>
<VirtualHost *:443>
   ServerAdmin renefgj@gmail.com
   ErrorLog ${APACHE_LOG_DIR}.error.log
   CustomLog ${APACHE_LOG_DIR}/access.log combined
 
   SSLProxyEngine On
   SSLProxyVerify none
   SSLProxyCheckPeerCN off
   SSLProxyCheckPeerName off
   SSLProxyCheckPeerExpire off

   ProxyPreserveHost On
   ProxyRequests Off

   LogLevel debug
   ProxyPass / http://143.54.112.219:100/
   ProxyPassReverse / http://143.54.112.219:100/

   Header edit Origin jupyther.brapci.inf.br 143.54.112.219:100
   RequestHeader edit Origin jupyther.brapci.inf.br 143.54.112.219:100
   Header edit Referer jupyther.brapci.inf.br 143.54.112.219:100
   RequestHeader edit Referer jupyther.brapci.inf.br 143.54.112.219:100

   <Location ~ "/(user/[^/]*)/(api/kernels/[^/]+/channels|terminals/websocket)/?">
       ProxyPass ws://143.54.112.219:100
       ProxyPassReverse ws://143.54.112.219:100
   </Location>

   ServerName jupyter.brapci.inf.br
   Include /etc/letsencrypt/options-ssl-apache.conf
   SSLCertificateFile /etc/letsencrypt/live/brapci.inf.br-0001/fullchain.pem
   SSLCertificateKeyFile /etc/letsencrypt/live/brapci.inf.br-0001/privkey.pem
</VirtualHost>
</IfModule>
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